Phased Genome Assemblies and Annotation of Tetraploid Potato: Atlantic, Castle Russet, Avenger, Altus, Colomba, Spunta

January 11, 2022 - The paper "Phased, chromosome-scale genome assemblies of tetraploid potato reveals a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity" by Hoopes et al. has been published in Molecular Plant.

The genome assembly and annotation files are available below. The entire data set for the paper is available on Data Dryad at https://doi.org/10.5061/dryad.3n5tb2rhw.

Atlantic Genome Assembly (v3):

Updated Annotation (v3) for the Phased Assembly of Atlantic Tetraploid Potato

February 17, 2023 - The Buell Lab at the University of Georgia is pleased to make available an updated set of genome annotation for the Atlantic genome assembly (ATL_v3). We generated transcript and functional annotations for the Atlantic genome (Hoopes et al. 2022) using mRNA-seq and Oxford Nanopore full-length cDNA libraries.

Note: the previous Atlantic v2.0 assembly and annotation can be found at Data Dryad at https://doi.org/10.5061/dryad.3n5tb2rhw.

JBrowse Genome Browser

Genome Assembly:

Genome Annotation:

Castle Russet Genome Assembly:

Castle Russet Genome Annotation:

Avenger Genome Assembly:

Avenger Genome Annotation:

Altus Genome Assembly:

Altus Genome Annotation:

Colomba Genome Assembly:

Colomba Genome Annotation:

Spunta Genome Assembly:

Spunta Genome Annotation:


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