Data Release for the chromosome-scale and haplotype-resolved genome assembly of the heterozygous tetraploid potato cultivar Otava

Authors:

Hequan Sun, Wen-Biao Jiao, Kristin Krause, José A. Campoy, Manish Goel, Kat Folz-Donahue, Christian Kukat, Bruno Huettel, Korbinian Schneeberger

Publication:

Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar. bioRXiv (2021) https://doi.org/10.1101/2021.05.15.444292

Genome Assembly and annotation for the heterozygous tetraploid potato Otava

Updated September 14, 2021

Genome Assembly:

• He1_haplotype_genome.fasta.gz - Haplotype He1 - Haplotype resolved genome assembly of the tetraploid potato Otava
• He2_haplotype_genome.fasta.gz - Haplotype He2 - Haplotype resolved genome assembly of the tetraploid potato Otava
• St1_haplotype_genome.fasta.gz - Haplotype St1 - Haplotype resolved genome assembly of the tetraploid potato Otava
• St2_haplotype_genome.fasta.gz - Haplotype St2 - Haplotype resolved genome assembly of the tetraploid potato Otava

Genome Annotation:

• He1.protein-coding.gene.gff3.gz - Genome annotation of tetraploid potato Otava haplotype He1 in GFF3 format
• He1.gene.fa.gz - Gene sequences of tetraploid potato Otava haplotype He1
• He1.CDS.fa.gz - Coding sequences (CDS) of gene models of tetraploid potato Otava haplotype He1
• He1.prot.fa.gz - Protein sequences of gene models of tetraploid potato Otava haplotype He1
• He2.protein-coding.gene.gff3.gz - Genome annotation of tetraploid potato Otava haplotype He2 in GFF3 format
• He2.gene.fa.gz - Gene sequences of tetraploid potato Otava haplotype He2
• He2.CDS.fa.gz - Coding sequences (CDS) of gene models of tetraploid potato Otava haplotype He2
• He2.prot.fa.gz - Protein sequences of gene models of tetraploid potato Otava haplotype He2
• St1.protein-coding.gene.gff3.gz - Genome annotation of tetraploid potato Otava haplotype St1 in GFF3 format
• St1.gene.fa.gz - Gene sequences of tetraploid potato Otava haplotype St1
• St1.CDS.fa.gz - Coding sequences (CDS) of gene models of tetraploid potato Otava haplotype St1
• St1.prot.fa.gz - Protein sequences of gene models of tetraploid potato Otava haplotype St1
• St2.protein-coding.gene.gff3.gz - Genome annotation of tetraploid potato Otava haplotype St2 in GFF3 format
• St2.gene.fa.gz - Gene sequences of tetraploid potato Otava haplotype St2
• St2.CDS.fa.gz - Coding sequences (CDS) of gene models of tetraploid potato Otava haplotype St2
• St2.prot.fa.gz - Protein sequences of gene models of tetraploid potato Otava haplotype St2

Genome Browser:

• Jbrowse genome browser for the genome annotation of the haplotype resolved assembly of the heterozygous tetraploid potato Otava