Genome Assembly and Annotation for Diploid Potato 'Jan' v1.1
October 1, 2024 - The chromosome scale genome assembly and genome annotation of the diploid potato 'Jan' v1.1 is now available. Jan was developed as a model system for potato functional genomics by Dr. Jiming Jiang at Michigan State University.
JBrowse Genome Browser
Genome Assembly:
- jan_v1.1.asm.fa.gz - Genome assembly for diploid potato 'Jan' v1.1
- jan_v1.1.asm.sm.fa.gz - Soft masked genome assembly for diploid potato 'Jan' v1.1
Genome Annotation:
- High Confidence Gene Model Set
- jan_v1.1.hc_gene_models.cdna.fa.gz - Transcript sequences (cDNA) of high confidence gene models
- jan_v1.1.hc_gene_models.cds.fa.gz - Coding sequences (CDS) of high confidence gene models
- jan_v1.1.hc_gene_models.pep.fa.gz - Protein sequences of high confidence gene models
- jan_v1.1.hc_gene_models.gff3.gz - High confidence gene models annotation in GFF3 format
- Representative High Confidence Gene Model Set
- jan_v1.1.hc_gene_models.repr.cdna.fa.gz - Transcript sequences (cDNA) of the representative high confidence gene models
- jan_v1.1.hc_gene_models.repr.cds.fa.gz - Coding sequences (CDS) of the representative high confidence gene models
- jan_v1.1.hc_gene_models.repr.pep.fa.gz - Protein sequences of the representative high confidence gene models
- jan_v1.1.hc_gene_models.repr.gff3.gz - Representative high confidence gene models annotation in GFF3 format
- Working Gene Model Set
- jan_v1.1.working_models.cdna.fa.gz - Transcript sequences (cDNA) of working gene models
- jan_v1.1.working_models.cds.fa.gz - Coding sequences (CDS) of working gene models
- jan_v1.1.working_models.pep.fa.gz - Protein sequences of working gene models
- jan_v1.1.working_models.gff3.gz - Working gene models annotation in GFF3 format
- jan_v1.1.functional_annotation.txt.gz - Functional annotation for the working gene models
High confidence representative gene models are a subset of the high confidence gene model set. Each representative gene model is the isoform with the longest CDS at each locus.
The set of working gene models contains all loci and isoforms from the annotation pipeline and may include artifacts such as partial gene models.
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