Data Release for the Chromosome-scale and Haplotype-resolved Genome Assembly and Annotation of the Cultivated Autotetraploid Potato "Cooperation-88" (C88)

Authors:

Zhigui Bao, Canhui Li, Guangcun Li，Sanwen Huang (huangsanwen@caas.cn), Qian Zhou (zhouq02@pcl.ac.cn), et.al.

Genome Assembly and annotation for the cultivated autotetraploid potato "Cooperation-88" (C88)

Updated February 11, 2022

Genome Assembly:

  • C88.v1.fa.gz - Chromosome-scale, Haplotype-resolved genome assembly of the cultivated autotetraploid potato Cooperation-88 (C88) (v1 assembly)

Genome Annotation:

  • C88.v1.gene.gff3.gz - Genome annotation of the autotetraploid potato Cooperation-88 (C88) in GFF3 format
  • C88.v1.EDTA.TEanno.gff3.gz - Repeat annotation of the autotetraploid potato Cooperation-88 (C88) in GFF3 format
  • C88.v1.cdna.fa.gz - Transcript sequences (cDNA) of gene models of the autotetraploid potato Cooperation-88 (C88)
  • C88.v1.cds.fa.gz - Coding sequences (CDS) of gene models of the autotetraploid potato Cooperation-88 (C88)
  • C88.v1.pep.fa.gz - Protein sequences of gene models of the autotetraploid potato Cooperation-88 (C88)
  • C88.v1.interproscan.tsv.gz - Interpro results for the gene models of the autotetraploid potato Cooperation-88 (C88) in TSV format

Genome Browser:

Funding has been provided by awards from the U.S. Department of Agriculture (2008-35300-18671) and the U.S. National Science Foundation (DBI-0604907, DBI-0834044, and 1202724). Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.

Photos courtesy of C. Robin Buell and the MSU Potato Breeding and Genetics Program.