>Genome assembly and annotation for Solanum candolleanum (v1.0)

October 4, 2022 - The Buell Lab at the University of Georgia is pleased to make available a long-read chromosome-scale genome assembly and genome annotation (v1.0) for Solanum candolleanum

JBrowse Genome Browser

• Genome browser for the Solanum candolleanum v1.0 assembly and annotation

Genome Assembly:

• S_candolleanum_v1.0.asm.fasta.gz - Genome assembly for Solanum candolleanum - v1.00
• S_candolleanum_v1.0.asm.hm.fasta.gz - Masked genome assembly for Solanum candolleanum - v1.00
• S_candolleanum_v1.0.asm.sm.fasta.gz - Soft masked genome assembly for Solanum candolleanum - v1.00

Genome Annotation:

• High Confidence Gene Model Set
• S_candolleanum_v1.0.gene_models.hc.cdna.fa.gz - Transcript sequences (cDNA) of high confidence gene models
• S_candolleanum_v1.0.gene_models.hc.cds.fa.gz - Coding sequences (CDS) of high confidence gene models
• S_candolleanum_v1.0.gene_models.hc.pep.fa.gz - Protein sequences of high confidence gene models
• S_candolleanum_v1.0.gene_models.hc.gff3.gz - High confidence gene models annotation in GFF3 format


• Representative High Confidence Gene Model Set

High confidence representative gene models are a subset of the high confidence gene model set. Each representative gene model is the isoform with the longest CDS at each locus.

• S_candolleanum_v1.0.gene_models.hc.repr.cdna.fa.gz - Transcript sequences (cDNA) of the representative high confidence gene models
• S_candolleanum_v1.0.gene_models.hc.repr.cds.fa.gz - Coding sequences (CDS) of the representative high confidence gene models
• S_candolleanum_v1.0.gene_models.hc.repr.pep.fa.gz - Protein sequences of the representative high confidence gene models
• S_candolleanum_v1.0.gene_models.hc.repr.gff3.gz - Representative high confidence gene models annotation in GFF3 format


• Working Gene Model Set

The set of working gene models contains all loci and isoforms from the annotation pipeline and may include artifacts such as partial gene models.

• S_candolleanum_v1.0.working_models.cdna.fa.gz - Transcript sequences (cDNA) of working gene models
• S_candolleanum_v1.0.working_models.cds.fa.gz - Coding sequences (CDS) of working gene models
• S_candolleanum_v1.0.working_models.pep.fa.gz - Protein sequences of working gene models
• S_candolleanum_v1.0.working_models.gff3.gz - Working gene models annotation in GFF3 format
• S_candolleanum_v1.0.functional_annotation.txt.gz - Functional annotation for the working gene models