Haplotype Resolved Genome assembly and annotation for Dihaploid Potato DH_LEL v1

September 16, 2024 - The Buell Lab at the University of Georgia is pleased to make available a haplotype resolved, chromosome scale genome assembly and genome annotation of the dihaploid potato DH_LEL v1

JBrowse Genome Browser

• Genome browser for the Dihaploid Potato DH_LEL assembly and annotation

Genome Assembly:

• DH_LEL_v1.asm.fa.gz - Genome assembly for dihaploid potato DH_LEL v1
• DH_LEL_v1.asm.hm.fa.gz - Masked genome assembly for dihaploid potato DH_LEL v1
• DH_LEL_v1.asm.sm.fa.gz - Soft masked genome assembly for dihaploid potato DH_LEL v1

Genome Annotation:

• High Confidence Gene Model Set
• DH_LEL_v1.hc_gene_models.cdna.fa.gz - Transcript sequences (cDNA) of high confidence gene models
• DH_LEL_v1.hc_gene_models.cds.fa.gz - Coding sequences (CDS) of high confidence gene models
• DH_LEL_v1.hc_gene_models.pep.fa.gz - Protein sequences of high confidence gene models
• DH_LEL_v1.hc_gene_models.gff3.gz - High confidence gene models annotation in GFF3 format


• Representative High Confidence Gene Model Set

High confidence representative gene models are a subset of the high confidence gene model set. Each representative gene model is the isoform with the longest CDS at each locus.

• DH_LEL_v1.hc_gene_models.repr.cdna.fa.gz - Transcript sequences (cDNA) of the representative high confidence gene models
• DH_LEL_v1.hc_gene_models.repr.cds.fa.gz - Coding sequences (CDS) of the representative high confidence gene models
• DH_LEL_v1.hc_gene_models.repr.pep.fa.gz - Protein sequences of the representative high confidence gene models
• DH_LEL_v1.hc_gene_models.repr.gff3.gz - Representative high confidence gene models annotation in GFF3 format


• Working Gene Model Set

The set of working gene models contains all loci and isoforms from the annotation pipeline and may include artifacts such as partial gene models.

• DH_LEL_v1.working_models.cdna.fa.gz - Transcript sequences (cDNA) of working gene models
• DH_LEL_v1.working_models.cds.fa.gz - Coding sequences (CDS) of working gene models
• DH_LEL_v1.working_models.pep.fa.gz - Protein sequences of working gene models
• DH_LEL_v1.working_models.gff3.gz - Working gene models annotation in GFF3 format
• DH_LEL_v1.functional_annotation.txt.gz - Functional annotation for the working gene models