Data Release for the chromosome-scale and haplotype-resolved genome assembly of the heterozygous tetraploid potato cultivar Otava

Authors:

Hequan Sun, Wen-Biao Jiao, Kristin Krause, José A. Campoy, Manish Goel, Kat Folz-Donahue, Christian Kukat, Bruno Huettel, Korbinian Schneeberger

Publication:

Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar. bioRXiv (2021) https://doi.org/10.1101/2021.05.15.444292

Genome Assembly and annotation for the heterozygous tetraploid potato Otava

Updated September 14, 2021

Genome Assembly:

Genome Annotation:

  • He1.protein-coding.gene.gff3.gz - Genome annotation of tetraploid potato Otava haplotype He1 in GFF3 format
  • He1.gene.fa.gz - Gene sequences of tetraploid potato Otava haplotype He1
  • He1.CDS.fa.gz - Coding sequences (CDS) of gene models of tetraploid potato Otava haplotype He1
  • He1.prot.fa.gz - Protein sequences of gene models of tetraploid potato Otava haplotype He1
  • He2.protein-coding.gene.gff3.gz - Genome annotation of tetraploid potato Otava haplotype He2 in GFF3 format
  • He2.gene.fa.gz - Gene sequences of tetraploid potato Otava haplotype He2
  • He2.CDS.fa.gz - Coding sequences (CDS) of gene models of tetraploid potato Otava haplotype He2
  • He2.prot.fa.gz - Protein sequences of gene models of tetraploid potato Otava haplotype He2
  • St1.protein-coding.gene.gff3.gz - Genome annotation of tetraploid potato Otava haplotype St1 in GFF3 format
  • St1.gene.fa.gz - Gene sequences of tetraploid potato Otava haplotype St1
  • St1.CDS.fa.gz - Coding sequences (CDS) of gene models of tetraploid potato Otava haplotype St1
  • St1.prot.fa.gz - Protein sequences of gene models of tetraploid potato Otava haplotype St1
  • St2.protein-coding.gene.gff3.gz - Genome annotation of tetraploid potato Otava haplotype St2 in GFF3 format
  • St2.gene.fa.gz - Gene sequences of tetraploid potato Otava haplotype St2
  • St2.CDS.fa.gz - Coding sequences (CDS) of gene models of tetraploid potato Otava haplotype St2
  • St2.prot.fa.gz - Protein sequences of gene models of tetraploid potato Otava haplotype St2

Genome Browser:

Funding has been provided by awards from the U.S. Department of Agriculture (2008-35300-18671) and the U.S. National Science Foundation (DBI-0604907, DBI-0834044, and 1202724). Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.

Photos courtesy of C. Robin Buell and the MSU Potato Breeding and Genetics Program.